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Actinidia chinensis genome database

WebFeb 17, 2024 · Actinidia eriantha is a characteristic fruit tree featuring with great potential for its abundant vitamin C and strong disease resistance. It has been used in a wide range of breeding programs and functional genomics studies. Previously published genome assemblies of A. eriantha are quite fragmented and not highly contiguous. WebActinidia chinensis var. chinensis (2n = 2x = 58) is a fruit tree in the same genus of kiwifruit. It is native to China. This genome corresponds to individual Red5, a diploid F3 sibcross with a predicted inbreeding coefficient of 37.5%, submitted by the New Zealand Institute for Plant and Food Research Ltd. Taxonomy ID 1590841

The genome sequencing and comparative analysis of a wild …

WebApr 16, 2024 · The current Actinidia chinensis (kiwifruit) ‘Hongyang’ draft genome has 164 Mb of sequences unassigned to pseudo-chromosomes, and omissions have been … WebAug 1, 2024 · The database currently contains all publicly available genome and gene sequences, gene annotations, biochemical pathways, transcriptome profiles derived from public RNA-Seq datasets, and... creative depot blog https://akumacreative.com

Actinidia chinensis Red5 Genome Kiwifruit Genome Database

WebMay 7, 2024 · Actinidia chinensis var. deliciosa is an allohexaploid species (2n = 6x) with an estimated genome size of 4.4 Gbp and 174 chromosomes [ 1, 2, 3 ]. It is a species that originated in southwestern China and belongs to the genus Actinidia, which includes at least 76 species [ 4 ]. WebActinidia chinensis var. chinensis (2n = 2x = 58) is a fruit tree in the same genus of kiwifruit. It is native to China. This genome corresponds to individual Red5, a diploid F3 … WebMar 6, 2024 · We assembled and annotated genome sequences of three kiwifruit species (genus Actinidia) and uncovered recurrent sex chromosome turnovers in multiple lineages. Specifically, we observed... creative depot stempel weihnachten

Chromosome-scale genome assembly of a natural diploid kiwifruit ...

Category:Chromosome-scale genome assembly of a natural diploid kiwifruit ...

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Actinidia chinensis genome database

high-quality Actinidia chinensis (kiwifruit) genome Horticulture ...

http://kiwifruitgenome.org/ WebFeb 14, 2024 · The most commercialized kiwifruit, Actinidia chinensis var. deliciosa (Acd), is an allohexaploid (2n = 6x = 174), making high-quality assemblage genome challenging. We previously discovered a...

Actinidia chinensis genome database

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WebJan 19, 2024 · All the transcriptome datasets were re-analyzed by using Actinidia chinensis, ‘Red5’ as a reference genome [33,53]. The raw reads were aligned by using the HISAT2 v2.0.1 [ 54 ], and the transcripts were assembled and quantified by using the STRINGTIE v2.1.5 [ 55 ]. http://kiwifruitgenome.org/feature/gene/Ach00g381791.2

WebOct 15, 2024 · DOI: 10.1038/s41438-019-0202-y Abstract Actinidia chinensis (kiwifruit) is a perennial horticultural crop species of the Actinidiaceae family with high nutritional and … WebFeb 27, 2024 · The manual annotation of the Actinidia chinensis (kiwifruit) genome has resulted in a high quality set of 33,044 genes. Here we investigate gene expression patterns in diverse tissues, visualised in an Electronic Fluorescent Pictograph (eFP) browser, to study the relationship of transcription factor (TF) expression using network analysis. Results

WebFeb 17, 2024 · The genus Actinidia, commonly known as kiwifruit, ‘the king of fruits’, includes economically important horticultural species, such as A.chinensis and A.chinensis var. deliciosa that have been extensively cultivated worldwide (Testolin et al. 2016).The genus Actinidia, together with other two sister genera, Clematoclethra and Saurauia, … WebNational Center for Biotechnology Information

WebActinidia / ˌ æ k t ɪ ˈ n ɪ d i ə / is a genus of woody and, with a few exceptions, dioecious plants native to temperate eastern Asia, occurring throughout most of China, Taiwan, Korea, and Japan, and extending …

WebAug 1, 2024 · Pilkington, S. M. et al. A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes … creative dance and music harveyWebActinidia chinensis (Chinese gooseberry, kiwifruit or yang tao) is native to China. Seeds were brought to New Zealand in 1904 [1] and have since been developed into the … creative design agency manchesterWebOct 15, 2024 · Two versions of the A. chinensis genomes have been previously assembled, based mainly on relatively short reads. Here, we report an improved chromosome-level … creative dance belchertownWebApr 16, 2024 · Results. A second genome of an A. chinensis (genotype Red5) was fully sequenced. This new sequence resulted in a 554.0 Mb assembly with all but 6 Mb … creative data systems incWebApr 16, 2024 · Results. A second genome of an A. chinensis (genotype Red5) was fully sequenced. This new sequence resulted in a 554.0 Mb assembly with all but 6 Mb assigned to pseudo-chromosomes. Pseudo-chromosomal comparisons showed a considerable number of translocation events have occurred following a whole genome duplication … creative description of an islandWebBlastP simply compares a protein query to a protein database. PSI-BLAST allows the user to build a PSSM (position-specific scoring matrix) using the results of the first BlastP run. PHI-BLAST performs the search but limits alignments to … creative d200 wireless speakerWebOct 15, 2024 · Actinidia chinensis (kiwifruit) is a perennial horticultural crop species of the Actinidiaceae family with high nutritional and economic value. Two versions of the A. chinensis genomes have... creative cuts brunswick ohio